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＜電子ブック＞
Computational Methods for Macromolecules: Challenges and Applications : Proceedings of the 3rd International Workshop on Algorithms for Macromolecular Modeling, New York, October 12–14, 2000 / edited by Tamar Schlick, Hin H. Gan
(Lecture Notes in Computational Science and Engineering. ISSN:21977100 ; 24)

版	1st ed. 2002.
出版者	(Berlin, Heidelberg : Springer Berlin Heidelberg : Imprint: Springer)
出版年	2002
本文言語	英語
大きさ	IX, 504 p. 4 illus. in color : online resource
著者標目	Schlick, Tamar editor Gan, Hin H editor SpringerLink (Online service)
件　名	LCSH:Mathematical models LCSH:Biochemistry LCSH:Computer simulation LCSH:Bioinformatics LCSH:Mathematics -- Data processing  全ての件名で検索 LCSH:Mathematical physics FREE:Mathematical Modeling and Industrial Mathematics FREE:Biochemistry FREE:Computer Modelling FREE:Computational and Systems Biology FREE:Computational Mathematics and Numerical Analysis FREE:Theoretical, Mathematical and Computational Physics
一般注記	Methods for Macromolecular Modeling (M3): Assessment of Progress and Future Perspectives -- I Biomolecular Dynamics Applications -- Mathematics and Molecular Neurobiology -- Structural and Dynamical Characterization of Nuclei Acid Water and Ion Binding Sites -- II Molecular Dynamics Methods -- A Test Set for Molecular Dynamics Algorithms -- Internal Coordinate Molecular Dynamics Based on the Spectroscopic B-Matrix -- The Sigma MD Program and a Generic Interface Applicable to Multi-Functional Programs with Complex, Hierarchical Command Structure -- Overcoming Instabilities in Verlet-I/r-RESPA with the Mollified Impulse Method -- III Monte Carlo Methods -- On the Potential of Monte Carlo Methods for Simulating Macromolecular Assemblies -- Structure Calculation of Protein Segments Connecting Domains with Defined Secondary Structure: A Simulated Annealing Monte Carlo Combined with Biased Scaled Collective Variables Technique -- IV Other Conformational Sampling Methods -- Hierarchical Uncoupling-Coupling of Metastable Conformations -- Automatic Identification of Metastable Conformations via Self-Organized Neural Networks -- V Free Energy Methods -- Equilibrium and Non-Equilibrium Foundations of Free Energy Computational Methods -- Free-Energy Calculations in Protein Folding by Generahzed-Ensemble Algorithms -- Ab Initio QM/MM and Free Energy Calculations of Enzyme Reactions -- VI Long Range Interactions and Fast Electrostatics Methods -- Treecode Algorithms for Computing Nonbonded Particle Interactions -- A New Reciprocal Space Based Method for Treating Long Range Interactions in Ab Initio and Force-Field Based Calculations for Surfaces, Wires, and Clusters -- Efficient Computational Algorithms for Fast Electrostatics and Molecular Docking -- VII Statistical Approaches to Protein Structures -- FoldRecognition Using the OPLS All-Atom Potential and the Surface Generalized Born Solvent Model -- Identification of Sequence-Specific Tertiary Packing Motifs in Protein Structures using Delaunay Tessellation -- Appendix: Color Plates HTTP:URL=https://doi.org/10.1007/978-3-642-56080-4

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